rLakeHabitat Introduction and Guide | Step 1: Loading Data | Step 2: Interpolation | Step 3: Habitat Quantification | Step 4: Visualization | Save DEM
Package: rLakeHabitat 1.0.2
rLakeHabitat: Interpolate Bathymetry and Quantify Physical Aquatic Habitat
Offers bathymetric interpolation using Inverse Distance Weighted and Ordinary Kriging via the 'gstat' and 'terra' packages. Other functions focus on quantifying physical aquatic habitats (e.g., littoral, epliminion, metalimnion, hypolimnion) from interpolated digital elevation models (DEMs). Functions were designed to calculate these metrics across water levels for use in reservoirs but can be applied to any DEM and will provide values for fixed conditions. Parameters like Secchi disk depth or estimated photic zone, thermocline depth, and water level fluctuation depth are included in most functions.
Authors:
rLakeHabitat_1.0.2.tar.gz
rLakeHabitat_1.0.2.zip(r-4.7)rLakeHabitat_1.0.2.zip(r-4.6)rLakeHabitat_1.0.2.zip(r-4.5)
rLakeHabitat_1.0.2.tgz(r-4.6-any)rLakeHabitat_1.0.2.tgz(r-4.5-any)
rLakeHabitat_1.0.2.tar.gz(r-4.7-any)rLakeHabitat_1.0.2.tar.gz(r-4.6-any)
rLakeHabitat_1.0.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
rLakeHabitat/json (API)
| # Install 'rLakeHabitat' in R: |
| install.packages('rLakeHabitat', repos = c('https://tristanblechinger.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://gitlab.com/tristanblechinger/rlakehabitat
Last updated from:4082b2d3aa. Checks:7 ERROR, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | ERROR | 250 | ||
| source / vignettes | OK | 266 | ||
| linux-release-x86_64 | ERROR | 299 | ||
| macos-release-arm64 | ERROR | 237 | ||
| macos-oldrel-arm64 | ERROR | 228 | ||
| windows-devel | ERROR | 267 | ||
| windows-release | ERROR | 176 | ||
| windows-oldrel | ERROR | 225 | ||
| wasm-release | OK | 388 |
Exports:animBathybathyMapcalcHypscalcLittoralcalcPhoticcalcSDIcalcVolumecontourPointscrossValidateestThermogenStackinterpBathylittoralVolrarify
Dependencies:abindclassclassIntclicpp11crayondata.tableDBIdplyre1071farverFNNgenericsgganimateggplot2gluegstatgtablehmsintervalsisobandKernSmoothlabelinglatticelifecyclelpSolvemagrittrMASSpillarpkgconfigplyrprettyunitsprogressproxypurrrR6RColorBrewerRcpprLakeAnalyzerrlangs2S7scalessfsftimespspacetimestarsstringistringrterratibbletidyrtidyselecttidyterratransformrtweenrunitsutf8vctrsviridisLitewithrwkxtszoo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Generate Animated Plot | animBathy |
| Plot Bathymetry Map | bathyMap |
| Calculate Hypsography | calcHyps |
| Calculate Littoral Area | calcLittoral |
| Calculate Euphotic Depth | calcPhotic |
| Calculate Shoreline Development Index | calcSDI |
| Calculate Pelagic Habitat Volumes | calcVolume |
| Contour Lines to Points | contourPoints |
| Cross Validate Interpolated Bathymetry | crossValidate |
| Estimate Average Thermocline Depth | estThermo |
| Create Raster Stack | genStack |
| Interpolate bathymetry | interpBathy |
| Calculate Littoral Volume | littoralVol |
| Rarify Depth Data | rarify |
